Serveur d'exploration sur la grippe en Espagne

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First case of highly pathogenic H5N1 avian influenza virus in Spain.

Identifieur interne : 000544 ( Main/Exploration ); précédent : 000543; suivant : 000545

First case of highly pathogenic H5N1 avian influenza virus in Spain.

Auteurs : M. Barral [Espagne] ; V. Alvarez ; R A Juste ; I. Agirre ; I. Inchausti

Source :

RBID : pubmed:19077185

Descripteurs français

English descriptors

Abstract

BACKGROUND

The H5N1 strain of avian influenza virus has been involved in severe mortality in domestic poultry, and has also been found in different species of wildlife in Europe. The Basque Country avian influenza surveillance program began sample collection and processing the fall of 2005.

RESULTS

Here we report the first confirmation of the presence of highly pathogenic H5N1 strain in a Great Crested Grebe (Podiceps cristatus) found dead in a pond near Vitoria in the Basque Country on the North of Spain. Regarding the survey for generic influenza type A virus, we have obtained positive results in about 8% of more that 3500 birds examined.

CONCLUSION

We think that the self-limiting nature of our finding and others proves that certain regions have ecological, geographical and climatological features that make it difficult for the H5N1 virus to spread 1 and cause disease at least in the large scale scenario that has been worrying human and animal health authorities during the last years.


DOI: 10.1186/1746-6148-4-50
PubMed: 19077185
PubMed Central: PMC2621144


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

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<Citation>J Clin Microbiol. 2000 Nov;38(11):4096-101</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11060074</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Emerg Infect Dis. 2008 Apr;14(4):600-7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18394278</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Clin Microbiol. 2002 Sep;40(9):3256-60</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">12202562</ArticleId>
</ArticleIdList>
</Reference>
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<Citation>J Mol Evol. 1980 Dec;16(2):111-20</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">7463489</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Biol Evol. 1987 Jul;4(4):406-25</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">3447015</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Arch Virol. 2001 Dec;146(12):2275-89</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11811679</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Science. 2006 Apr 21;312(5772):384-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16627734</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Emerg Infect Dis. 2006 Apr;12(4):700-1</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16715581</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Avian Dis. 2007 Mar;51(1 Suppl):235-41</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17494559</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Emerg Infect Dis. 2007 Apr;13(4):547-52</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17553268</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Biol Evol. 2007 Aug;24(8):1596-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17488738</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nucleic Acids Res. 1994 Nov 11;22(22):4673-80</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">7984417</ArticleId>
</ArticleIdList>
</Reference>
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